Installation

Requirements

Astropy has the following strict requirements:

Note

Also see pip-requirements.

Astropy also depends on other packages for optional features:

  • scipy: To power a variety of features in several modules.
  • h5py: To read/write Table objects from/to HDF5 files.
  • BeautifulSoup: To read Table objects from HTML files.
  • bleach: Used to sanitize text when disabling HTML escaping in the Table HTML writer.
  • PyYAML: To read/write Table objects from/to the Enhanced CSV ASCII table format and to serialize mixins for various formats.
  • xmllint: To validate VOTABLE XML files. This is a command line tool installed outside of Python.
  • pandas: To read/write Table objects from/to pandas DataFrame objects.
  • bintrees for faster FastRBT and FastBST indexing engines with Table, although these will still be slower in most cases than the default indexing engine.
  • sortedcontainers for faster SCEngine indexing engine with Table, although this may still be slower in some cases than the default indexing engine.
  • pytz: To specify and convert between timezones.
  • jplephem: To retrieve JPL ephemeris of Solar System objects.
  • matplotlib 1.5 or later: To provide plotting functionality that astropy.visualization enhances.
  • scikit-image: To downsample a data array in astropy.nddata.utils.
  • setuptools: Used for discovery of entry points which are used to insert fitters into astropy.modeling.fitting.
  • mpmath: Used for the ‘kraft-burrows-nousek’ interval in poisson_conf_interval.
  • objgraph: Used only in tests to test for reference leaks.
  • asdf 2.0 or later: Enables the serialization of various Astropy classes into a portable, hierarchical, human-readable representation.
  • bottleneck: Improves the performance of sigma-clipping and other functionality that may required computing statistics on arrays with NaN values.
  • pytest-astropy: See Testing a source code build of Astropy.
  • pytest-xdist: Used for distributed testing.
  • pytest-mpl: Used for testing with Matplotlib figures.
  • IPython: Used for testing notebook interface of Table.
  • coverage: Used for code coverage measurements.
  • skyfield: Used for testing Solar System coordinates.

Note

Also see pip-requirements-dev.

However, note that these only need to be installed if those particular features are needed. Astropy will import even if these dependencies are not installed.

Installing Astropy

Using pip

To install Astropy with pip, simply run:

pip install astropy --no-deps

Warning

Users of the Anaconda python distribution should follow the instructions for Using conda.

Note

You will need a C compiler (e.g. gcc or clang) to be installed (see Building from source below) for the installation to succeed.

Note

The --no-deps flag is optional, but highly recommended if you already have Numpy installed, since otherwise pip will sometimes try to “help” you by upgrading your Numpy installation, which may not always be desired.

Note

If you get a PermissionError this means that you do not have the required administrative access to install new packages to your Python installation. In this case you may consider using the --user option to install the package into your home directory. You can read more about how to do this in the pip documentation.

Alternatively, if you intend to do development on other software that uses Astropy, such as an affiliated package, consider installing Astropy into a virtualenv.

Do not install Astropy or other third-party packages using sudo unless you are fully aware of the risks.

Using conda

Astropy is installed by default with the Anaconda Distribution. To update to the latest version run:

conda update astropy

Note

There may be a delay of a day or two between when a new version of Astropy is released and when a package is available for Anaconda. You can check for the list of available versions with conda search astropy.

Note

Attempting to use pip to upgrade your installation of Astropy may result in a corrupted installation.

Testing an installed Astropy

The easiest way to test your installed version of astropy is running correctly is to use the astropy.test() function:

import astropy
astropy.test()

The tests should run and print out any failures, which you can report at the Astropy issue tracker.

Note

This way of running the tests may not work if you do it in the astropy source distribution. See Testing a source code build of Astropy for how to run the tests from the source code directory, or Running Tests for more details.

Note

Running the tests this way is currently disabled in the IPython REPL due to conflicts with some common display settings in IPython. Please run the Astropy tests under the standard Python command-line interpreter.

Building from source

Prerequisites

You will need a compiler suite and the development headers for Python and Numpy in order to build Astropy.

You will also need Cython (v0.21 or later) and jinja2 (v2.7 or later) installed to build from source, unless you are installing a release. (The released packages have the necessary C files packaged with them, and hence do not require Cython.)

Prerequisites for Linux

On Linux, using the package manager for your distribution will usually be the easiest route. In order to build from source, you’ll need the python development package for your Linux distribution.

For Debian/Ubuntu:

sudo apt-get install python-dev

For Fedora/RHEL:

sudo yum install python-devel

Prerequisites for Mac OS X

On MacOS X you will need the XCode command line tools which can be installed using:

xcode-select --install

Follow the onscreen instructions to install the command line tools required. Note that you do not need to install the full XCode distribution (assuming you are using MacOS X 10.9 or later).

The instructions for building Numpy from source are a good resource for setting up your environment to build Python packages.

Obtaining the source packages

Source packages

The latest stable source package for Astropy can be downloaded here.

Development repository

The latest development version of Astropy can be cloned from github using this command:

git clone --recursive git://github.com/astropy/astropy.git

Note

If you wish to participate in the development of Astropy, see Developer Documentation. This document covers only the basics necessary to install Astropy.

Building and Installing

Astropy uses the Python built-in distutils framework for building and installing and requires the setuptools package – the later is automatically downloaded when running python setup.py if it is not already provided by your system.

If Numpy is not already installed in your Python environment, the astropy setup process will try to download and install it before continuing to install astropy.

To build Astropy (from the root of the source tree):

python setup.py build

To install Astropy (from the root of the source tree):

python setup.py install

Troubleshooting

If you get an error mentioning that you do not have the correct permissions to install Astropy into the default site-packages directory, you can try installing with:

python setup.py install --user

which will install into a default directory in your home directory.

External C libraries

The Astropy source ships with the C source code of a number of libraries. By default, these internal copies are used to build Astropy. However, if you wish to use the system-wide installation of one of those libraries, you can pass one or more of the --use-system-X flags to the setup.py build command.

For example, to build Astropy using the system libexpat, use:

python setup.py build --use-system-expat

To build using all of the system libraries, use:

python setup.py build --use-system-libraries

To see which system libraries Astropy knows how to build against, use:

python setup.py build --help

As with all distutils commandline options, they may also be provided in a setup.cfg in the same directory as setup.py. For example, to use the system libexpat, add the following to the setup.cfg file:

[build]
use_system_expat=1

The C libraries currently bundled with Astropy include:

  • wcslib see cextern/wcslib/README for the bundled version.
  • cfitsio see cextern/cfitsio/changes.txt for the bundled version.
  • erfa see cextern/erfa/README.rst for the bundled version.
  • expat see cextern/expat/README for the bundled version.

Installing Astropy into CASA

If you want to be able to use Astropy inside CASA, the easiest way is to do so from inside CASA.

First, we need to make sure pip is installed. Start up CASA as normal, and type:

CASA <2>: from setuptools.command import easy_install

CASA <3>: easy_install.main(['--user', 'pip'])

Now, quit CASA and re-open it, then type the following to install Astropy:

CASA <2>: import subprocess, sys

CASA <3>: subprocess.check_call([sys.executable, '-m', 'pip', 'install', 'astropy'])

Then close CASA again and open it, and you should be able to import Astropy:

CASA <2>: import astropy

Any astropy affiliated package can be installed the same way (e.g. the spectral-cube or other packages that may be useful for radio astronomy).

Note

The above instructions have not been tested on all systems. We know of a few examples that do work, but that is not a guarantee that this will work on all systems. If you install astropy and begin to encounter issues with CASA, please look at the known CASA issues and, if you don’t encounter your issue there, post a new one.

Building documentation

Note

Building the documentation is in general not necessary unless you are writing new documentation or do not have internet access, because the latest (and archive) versions of astropy’s documentation should be available at docs.astropy.org .

Dependencies

Building the documentation requires the Astropy source code and some additional packages, including those in Requirements. The easiest way to install the extra dependencies for documentation is to install the sphinx-astropy package, either with pip:

pip install sphinx-astropy

or with conda:

conda install -c astropy sphinx-astropy

In addition to providing configuration common to packages in the Astropy ecosystem, this package also serves as a way to automatically get the main dependencies, including:

  • Sphinx - the main package we use to build the documentation.
  • astropy-sphinx-theme - the default ‘bootstrap’ theme use by Astropy and a number of affiliated packages.
  • sphinx-automodapi - an extension that makes it easy to automatically generate API documentation.
  • sphinx-gallery - an extension to generate example galleries
  • numpydoc - an extension to parse docstrings in NumpyDoc format
  • pillow - used in one of the examples

In addition, if you want inheritance graphs to be generated, you will need to make sure that Graphviz is installed. If you install sphinx-astropy with conda, graphviz will automatically get installed, but if you use pip, you will need to install Graphviz separately as it isn’t a Python package.

Note

Also see pip-requirements-doc.

Building

There are two ways to build the Astropy documentation. The most straightforward way is to execute the command (from the astropy source directory):

python setup.py build_docs

The documentation will be built in the docs/_build/html directory, and can be read by pointing a web browser to docs/_build/html/index.html.

The LaTeX documentation can be generated by using the command:

python setup.py build_docs -b latex

The LaTeX file Astropy.tex will be created in the docs/_build/latex directory, and can be compiled using pdflatex.

The above method builds the API documentation from the source code. Alternatively, you can do:

cd docs
make html

And the documentation will be generated in the same location, but using the installed version of Astropy.

Reporting issues/requesting features

As mentioned above, building the documentation depends on a number of sphinx extensions and other packages. Since it isn’t necessarily straightforward to know which package is causing issues or would need to have a new feature implemented, you can simply open an issue in the core astropy package issue tracker. However, if you wish you can also open issues in the repositories for some of the dependencies:

  • For requests/issues related to the appearance of the docs (e.g. related to the CSS), you can open an issue in the astropy-sphinx-theme issue tracker.
  • For requests/issues related to the auto-generated API docs which appear to be general issues rather than an issue with a specific docstring, you can use the sphinx-automodapi issue tracker.
  • For issues related to the default configuration (e.g which extensions are enabled by default), you can use the sphinx-astropy issue tracker.

Testing a source code build of Astropy

Before running tests, it is necessary to make sure that Astropy’s test dependencies are installed. This can be done with the following command:

pip install pytest-astropy

More information on what the pytest-astropy package provides can be found in Testing Dependencies.

The easiest way to test that your Astropy built correctly (without installing astropy) is to run this from the root of the source tree:

python setup.py test

There are also alternative methods of Running Tests. Note that you will need pytest to be installed for this to work.